Class: functional annotation
An assignment of a function term (e.g. reaction or pathway) that is executed by a gene product, or which the gene product plays an active role in. Functional annotations can be assigned manually by curators, or automatically in workflows. In the context of NMDC, all function annotation is performed automatically, typically using HMM or Blast type methods
URI: nmdc:FunctionalAnnotation
Referenced by Class
Attributes
Own
functional annotation➞was generated by 0..1
Description: provenance for the annotation.
Range: MetagenomeAnnotationActivity
subject 0..1
Range: GeneProduct
functional annotation➞has function 0..1
Range: String
functional annotation➞type 0..1
Description: TODO
Range: OntologyClass
Example: nmdc:Biosample None
Example: nmdc:Study None
Other properties
Comments: | move id slot usage patterns to has_function slot usage? | |
See also: | https://img.jgi.doe.gov/docs/functional-annotation.pdf | |
https://github.com/microbiomedata/mg_annotation/blob/master/functional-annotation.wdl | ||
Narrow Mappings: | biolink:GeneToGoTermAssociation |