Class: protein quantification
This is used to link a metaproteomics analysis workflow to a specific protein
URI: nmdc:ProteinQuantification
Referenced by Class
Attributes
Own
protein quantification➞best protein 0..1
Description: the specific protein identifier most correctly grouped to its associated peptide sequences
Range: GeneProduct
protein quantification➞all proteins 0..*
Description: the grouped list of protein identifiers associated with the peptide sequences that were grouped to a best protein
Range: GeneProduct
protein quantification➞peptide_sequence_count 0..1
Description: count of peptide sequences grouped to the best_protein
Range: Integer
protein quantification➞protein_spectral_count 0..1
Description: sum of filter passing MS2 spectra associated with the best protein within a given LC-MS/MS data file
Range: Integer
protein quantification➞protein_sum_masic_abundance 0..1
Description: combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the best protein from a given LC-MS/MS data file using the MASIC tool
Range: Integer