Class: study

A study summarizes the overall goal of a research initiative and outlines the key objective of its underlying projects.

URI: nmdc:Study

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Identifier prefixes

  • GOLD

  • insdc.srs

  • mgnify

Parents

  • is_a: NamedThing - a databased entity or concept/class

Referenced by Class

Attributes

Own

  • ecosystem 0..1

    • Description: An ecosystem is a combination of a physical environment (abiotic factors) and all the organisms (biotic factors) that interact with this environment. Ecosystem is in position 1/5 in a GOLD path.

    • Range: String

  • ecosystem_category 0..1

    • Description: Ecosystem categories represent divisions within the ecosystem based on specific characteristics of the environment from where an organism or sample is isolated. Ecosystem category is in position 2/5 in a GOLD path.

    • Range: String

  • ecosystem_type 0..1

    • Description: Ecosystem types represent things having common characteristics within the Ecosystem Category. These common characteristics based grouping is still broad but specific to the characteristics of a given environment. Ecosystem type is in position 3/5 in a GOLD path.

    • Range: String

  • ecosystem_subtype 0..1

    • Description: Ecosystem subtypes represent further subdivision of Ecosystem types into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD path.

    • Range: String

  • specific_ecosystem 0..1

    • Description: Specific ecosystems represent specific features of the environment like aphotic zone in an ocean or gastric mucosa within a host digestive system. Specific ecosystem is in position 5/5 in a GOLD path.

    • Range: String

  • principal investigator 0..1

    • Description: Principal Investigator who led the study and/or generated the dataset.

    • Range: PersonValue

  • study➞doi 0..1

    • Description: The dataset citation for this study

    • Range: AttributeValue

  • title 0..1

    • Description: A name given to the entity that differs from the name/label programatically assigned to it. For example, when extracting study information for GOLD, the GOLD system has assigned a name/label. However, for display purposes, we may also wish the capture the title of the proposal that was used to fund the study.

    • Range: String

  • alternative titles 0..*

    • Description: A list of alternative titles for the entity. The distinction between title and alternative titles is application-specific.

    • Range: String

  • alternative descriptions 0..*

    • Description: A list of alternative descriptions for the entity. The distinction between desciption and alternative descriptions is application-specific.

    • Range: String

  • alternative names 0..*

    • Description: A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific.

    • Range: String

  • abstract 0..1

    • Description: The abstract of manuscript/grant associated with the entity; i.e., a summary of the resource.

    • Range: String

  • objective 0..1

    • Description: The scientific objectives associated with the entity. It SHOULD correspond to scientific norms for objectives field in a structured abstract.

    • Range: String

  • websites 0..*

    • Description: A list of websites that are assocatiated with the entity.

    • Range: String

  • publications 0..*

    • Description: A list of publications that are assocatiated with the entity. The publicatons SHOULD be given using an identifier, such as a DOI or Pubmed ID, if possible.

    • Range: String

  • ess dive datasets 0..*

    • Description: List of ESS-DIVE dataset DOIs

    • Range: String

  • type 0..1

    • Description: An optional string that specifies the type object. This is used to allow for searches for different kinds of objects.

    • Range: String

    • Example: nmdc:Biosample None

    • Example: nmdc:Study None

  • relevant protocols 0..*

  • funding sources 0..*

  • INSDC bioproject identifiers 0..*

    • Description: identifiers for corresponding project in INSDC Bioproject

    • Range: ExternalIdentifier

    • Example: https://identifiers.org/bioproject:PRJNA366857 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome

  • INSDC SRA ENA study identifiers 0..*

    • Description: identifiers for corresponding project in INSDC SRA / ENA

    • Range: ExternalIdentifier

    • Example: https://identifiers.org/insdc.sra:SRP121659 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome

  • GOLD study identifiers 0..*

    • Description: identifiers for corresponding project in GOLD

    • Range: ExternalIdentifier

    • Example: https://identifiers.org/gold:Gs0110115 None

  • MGnify project identifiers 0..*

    • Description: identifiers for corresponding project in MGnify

    • Range: ExternalIdentifier

    • Example: https://identifiers.org/mgnify.proj:MGYS00005757 None

  • has credit associations 0..*

    • Description: This slot links a study to a credit association. The credit association will be linked to a person value and to a CRediT Contributor Roles term. Overall semantics: person should get credit X for their participation in the study

    • Range: CreditAssociation

  • study image 0..*

    • Description: Links a study to one or more images.

    • Range: ImageValue

Inherited from named thing:

  • id 1..1

    • Description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI

    • Range: String

  • name 0..1

    • Description: A human readable label for an entity

    • Range: String

  • description 0..1

    • Description: a human-readable description of a thing

    • Range: String

  • alternative identifiers 0..*

    • Description: A list of alternative identifiers for the entity.

    • Range: String

Other properties

Aliases: proposal
research proposal
research study
investigation
project
umbrella project
Alt Descriptions: A study (project) groups together data submitted to the archive and controls its release date. A study accession is typically used when citing data submitted to ENA (embl.ena)
In Subsets: sample subset
Exact Mappings: SIO:001066
NCIT:C63536
OBI:0000066
ISA:Study
Close Mappings: NCIT:C41198
ISA:Investigation
Broad Mappings: prov:Activity