Class: study
A study summarizes the overall goal of a research initiative and outlines the key objective of its underlying projects.
URI: nmdc:Study
Identifier prefixes
GOLD
insdc.srs
mgnify
Parents
is_a: NamedThing - a databased entity or concept/class
Referenced by Class
Attributes
Own
ecosystem 0..1
Description: An ecosystem is a combination of a physical environment (abiotic factors) and all the organisms (biotic factors) that interact with this environment. Ecosystem is in position 1/5 in a GOLD path.
Range: String
ecosystem_category 0..1
Description: Ecosystem categories represent divisions within the ecosystem based on specific characteristics of the environment from where an organism or sample is isolated. Ecosystem category is in position 2/5 in a GOLD path.
Range: String
ecosystem_type 0..1
Description: Ecosystem types represent things having common characteristics within the Ecosystem Category. These common characteristics based grouping is still broad but specific to the characteristics of a given environment. Ecosystem type is in position 3/5 in a GOLD path.
Range: String
ecosystem_subtype 0..1
Description: Ecosystem subtypes represent further subdivision of Ecosystem types into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD path.
Range: String
specific_ecosystem 0..1
Description: Specific ecosystems represent specific features of the environment like aphotic zone in an ocean or gastric mucosa within a host digestive system. Specific ecosystem is in position 5/5 in a GOLD path.
Range: String
-
Description: Principal Investigator who led the study and/or generated the dataset.
Range: PersonValue
study➞doi 0..1
Description: The dataset citation for this study
Range: AttributeValue
title 0..1
Description: A name given to the entity that differs from the name/label programatically assigned to it. For example, when extracting study information for GOLD, the GOLD system has assigned a name/label. However, for display purposes, we may also wish the capture the title of the proposal that was used to fund the study.
Range: String
alternative titles 0..*
Description: A list of alternative titles for the entity. The distinction between title and alternative titles is application-specific.
Range: String
-
Description: A list of alternative descriptions for the entity. The distinction between desciption and alternative descriptions is application-specific.
Range: String
alternative names 0..*
Description: A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific.
Range: String
abstract 0..1
Description: The abstract of manuscript/grant associated with the entity; i.e., a summary of the resource.
Range: String
objective 0..1
Description: The scientific objectives associated with the entity. It SHOULD correspond to scientific norms for objectives field in a structured abstract.
Range: String
websites 0..*
Description: A list of websites that are assocatiated with the entity.
Range: String
publications 0..*
Description: A list of publications that are assocatiated with the entity. The publicatons SHOULD be given using an identifier, such as a DOI or Pubmed ID, if possible.
Range: String
ess dive datasets 0..*
Description: List of ESS-DIVE dataset DOIs
Range: String
type 0..1
Description: An optional string that specifies the type object. This is used to allow for searches for different kinds of objects.
Range: String
Example: nmdc:Biosample None
Example: nmdc:Study None
relevant protocols 0..*
Range: String
funding sources 0..*
Range: String
INSDC bioproject identifiers 0..*
Description: identifiers for corresponding project in INSDC Bioproject
Range: ExternalIdentifier
Example: https://identifiers.org/bioproject:PRJNA366857 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome
INSDC SRA ENA study identifiers 0..*
Description: identifiers for corresponding project in INSDC SRA / ENA
Range: ExternalIdentifier
Example: https://identifiers.org/insdc.sra:SRP121659 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome
-
Description: identifiers for corresponding project in GOLD
Range: ExternalIdentifier
Example: https://identifiers.org/gold:Gs0110115 None
MGnify project identifiers 0..*
Description: identifiers for corresponding project in MGnify
Range: ExternalIdentifier
Example: https://identifiers.org/mgnify.proj:MGYS00005757 None
-
Description: This slot links a study to a credit association. The credit association will be linked to a person value and to a CRediT Contributor Roles term. Overall semantics: person should get credit X for their participation in the study
Range: CreditAssociation
study image 0..*
Description: Links a study to one or more images.
Range: ImageValue
Inherited from named thing:
id 1..1
Description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
Range: String
name 0..1
Description: A human readable label for an entity
Range: String
description 0..1
Description: a human-readable description of a thing
Range: String
-
Description: A list of alternative identifiers for the entity.
Range: String
Other properties
Aliases: | proposal | |
research proposal | ||
research study | ||
investigation | ||
project | ||
umbrella project | ||
Alt Descriptions: | A study (project) groups together data submitted to the archive and controls its release date. A study accession is typically used when citing data submitted to ENA (embl.ena) | |
In Subsets: | sample subset | |
Exact Mappings: | SIO:001066 | |
NCIT:C63536 | ||
OBI:0000066 | ||
ISA:Study | ||
Close Mappings: | NCIT:C41198 | |
ISA:Investigation | ||
Broad Mappings: | prov:Activity |