Class: genome feature

A feature localized to an interval along a genome

URI: nmdc:GenomeFeature

Referenced by Class

• Database genome feature set _0..* GenomeFeature

Attributes

Own

• genome feature➞seqid _1..1

  • Description: The ID of the landmark used to establish the coordinate system for the current feature.

  • Range: String

• genome feature➞type _0..1

  • Description: A type from the sequence ontology

  • Range: OntologyClass

  • Example: nmdc:Biosample None

  • Example: nmdc:Study None

• genome feature➞start _1..1

  • Description: The start of the feature in positive 1-based integer coordinates

  • Range: Integer

• genome feature➞end _1..1

  • Description: The end of the feature in positive 1-based integer coordinates

  • Range: Integer

• genome feature➞strand _0..1

  • Description: The strand on which a feature is located. Has a value of ‘+’ (sense strand or forward strand) or ‘-’ (anti-sense strand or reverse strand).

  • Range: String

• genome feature➞phase _0..1

  • Description: The phase for a coding sequence entity. For example, phase of a CDS as represented in a GFF3 with a value of 0, 1 or 2.

  • Range: Integer

• genome feature➞encodes _0..1

  • Description: The gene product encoded by this feature. Typically this is used for a CDS feature or gene feature which will encode a protein. It can also be used by a nc transcript ot gene feature that encoded a ncRNA

  • Range: GeneProduct

• genome feature➞feature type _0..1

  • Description: TODO: Yuri to write

  • Range: String

Other properties

Comments:		corresponds to an entry in GFF3
See also:		https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md