Class: database

An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed databse top level holder class. When translated to JSON-Schema this is the ‘root’ object. It should contain pointers to other objects of interest

URI: nmdc:Database

Referenced by Class

Attributes

Own

• biosample set _0..*

  • Description: This property links a database object to the set of samples within it.

  • Range: Biosample

• study set _0..*

  • Description: This property links a database object to the set of studies within it.

  • Range: Study

• data object set _0..*

  • Description: This property links a database object to the set of data objects within it.

  • Range: DataObject

• activity set _0..*

  • Description: This property links a database object to the set of workflow activities.

  • Range: WorkflowExecutionActivity

• mags activity set _0..*

  • Description: This property links a database object to the set of MAGs analysis activities.

  • Range: MAGsAnalysisActivity

• metabolomics analysis activity set _0..*

  • Description: This property links a database object to the set of metabolomics analysis activities.

  • Range: MetabolomicsAnalysisActivity

• metaproteomics analysis activity set _0..*

  • Description: This property links a database object to the set of metaproteomics analysis activities.

  • Range: MetaproteomicsAnalysisActivity

• metagenome annotation activity set _0..*

  • Description: This property links a database object to the set of metagenome annotation activities.

  • Range: MetagenomeAnnotationActivity

• metagenome assembly set _0..*

  • Description: This property links a database object to the set of metagenome assembly activities.

  • Range: MetagenomeAssembly

• metatranscriptome activity set _0..*

  • Description: This property links a database object to the set of metatranscriptome analysis activities.

  • Range: MetatranscriptomeActivity

• read QC analysis activity set _0..*

  • Description: This property links a database object to the set of read QC analysis activities.

  • Range: ReadQCAnalysisActivity

• read based analysis activity set _0..*

  • Description: This property links a database object to the set of read based analysis activities.

  • Range: ReadBasedAnalysisActivity

• nom analysis activity set _0..*

  • Description: This property links a database object to the set of natural organic matter (NOM) analysis activities.

  • Range: NomAnalysisActivity

• omics processing set _0..*

  • Description: This property links a database object to the set of omics processings within it.

  • Range: OmicsProcessing

• functional annotation set _0..*

  • Description: This property links a database object to the set of all functional annotations

  • Range: FunctionalAnnotation

• genome feature set _0..*

  • Description: This property links a database object to the set of all features

  • Range: GenomeFeature

• database➞nmdc schema version _0..1

  • Description: TODO

  • Range: String

• database➞date created _0..1

  • Description: TODO

  • Range: String

• database➞etl software version _0..1

  • Description: TODO

  • Range: String

Other properties

Aliases:		NMDC metadata object